rs27571797 SNP Detail

Summary

• ID
  rs27571797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCTCC ACAAAAAAGT
  TCAACGCCAA CTGCATGGCG ATTTGCCATT TATAGGGCGT GGAAGCCTCA TCAAGGGTCT
  GTCTGCTCAC ACCTGAATGG CTTCCTTCCT GGAAAGCATG GATAAACTAG CAGTCTTGTG
  CCAAGGTACA ATATTTCCCT GGTCTTAAGA ACAAGTCCCA ATTAAGAAAG GGCTTTCTGA
  Y
  GGTCCCTGAA AGGCAGTCTT TGCCTGGCAC CCACCACACT GAAGTGCTAA CAAACTACAG
  ATTCCCAACC TCTTTTATAA AGAGGACAGA GTTCCTAATG CAATGCAGCT CTTCTGGGGC
  ATCAACATGG CGACAGCCTG GTCTGACAAA GTTCTTTATC ACGCTTTGTC ACCCAGCCCC
  CCTCCCCTAA GTGATGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37747213	NES09170004	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C		C	C	C	C
ss45587685	mCV22587204	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss147473514	ENSMUSSNP7121439	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571797					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747213	NES09170004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859475 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	163 bp proximal