rs27571795 SNP Detail

Summary

• ID
  rs27571795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCACCA CACTGAAGTG
  CTAACAAACT ACAGATTCCC AACCTCTTTT ATAAAGAGGA CAGAGTTCCT AATGCAATGC
  AGCTCTTCTG GGGCATCAAC ATGGCGACAG CCTGGTCTGA CAAAGTTCTT TATCACGCTT
  TGTCACCCAG CCCCCCTCCC CTAAGTGATG GGGACTATGT GGCACTTGAA TAATGTCATC
  R
  CACTTAATCC TGACAAGAAC CAGTGAGCAA CAACCCTGAG CCCTGTCACA GGACGAGGCA
  TCTGGGAGAG TAAGGCTCAG CTCGAGGCCC CACAACCCTG TCTAACCTTT ACCTTTGTAC
  GTCAGCTCAG CTAAACGACA GTATCCAGCG ATCAAACTCA GGTATGGCTG GGAAGGAGTT
  TTGTAATCAG CTGAGTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747211	NES09170006	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	G		G	A	A	A		A
ss45723217	mCV22587203	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss147473521	ENSMUSSNP2963450	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321330913	CHEV_4_131688306	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571795					SNP	G	G	A	A	A	G	A	A	G	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747211	NES09170006	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859702 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	within coordinates
Rr600882	regulatory region 600882	1851 bp proximal