rs27571794 SNP Detail

Summary

• ID
  rs27571794
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAAAG AGGACAGAGT
  TCCTAATGCA ATGCAGCTCT TCTGGGGCAT CAACATGGCG ACAGCCTGGT CTGACAAAGT
  TCTTTATCAC GCTTTGTCAC CCAGCCCCCC TCCCCTAAGT GATGGGGACT ATGTGGCACT
  TGAATAATGT CATCACACTT AATCCTGACA AGAACCAGTG AGCAACAACC CTGAGCCCTG
  H
  CACAGGACGA GGCATCTGGG AGAGTAAGGC TCAGCTCGAG GCCCCACAAC CCTGTCTAAC
  CTTTACCTTT GTACGTCAGC TCAGCTAAAC GACAGTATCC AGCGATCAAA CTCAGGTATG
  GCTGGGAAGG AGTTTTGTAA TCAGCTGAGT TTAAATGAAG GAGATTAACC TTAGTCACCT
  GTGGGAGCAA TATCTGAAGA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37747210	NES09170007	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A		A	T	T		T
ss321330914	CHEV_4_131688352	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27571794					SNP	T	T	T	T	T	T	T	A	C	A	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747210	NES09170007	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859748 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	within coordinates
Rr600882	regulatory region 600882	1805 bp proximal