rs27571400 SNP Detail

Summary

• ID
  rs27571400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140937929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGAGGGGTG TGCCCATGGG GCAGTTGAGC TCTTCCAACA GGATTTTCTT TCATTTTTTA
  AAGAGACAGA CAGACAGACA GACAGACAGA CAGAAATACA TATGGACGAC AAAAGGGGAG
  TAATGGATCC CCTGGAGCTG GAATTACACA CATTTGTAAG CCACTAGATG TGGGTGCTGG
  GATCCAGCCC TCTGACAGAC TGACAAAGCA GTTAACACTC TTGCCTGCTA AGCCATCTCT
  CCAGCCCCTT ATTTCATGTG TGTCTGTGTG TGCCTATGTG ATTCTGTGTG TCTGTGTGTG
  Y
  GCATCTTCAT AGATAAGTGA AAAGATAGTG TGTGAGTTGG TTCTCTCCAT CTATCATGTG
  GGTCTCAGGA ATTTTGTCTC CCACTAGGTG GGCCCCAAGG ATCAAAGATC AGTATCAGGC
  TTGGCAGCCA GCGAGTGCTC TTACCTGCGG AGCCTAACTC CTAACACATA GCCTAAGTGA
  TCCCAGGAGG CCTTAGGAGA GAGCCGTGAC TGTGGAGAAG CTGGTCAGAG AAGACCCTGT
  GGAAGGAACA TCAGGGACAT TGGCCCTGCT TGCTCTGTCT GTAACCAGGG AGTCTCCACT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786729	NES09127111	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	T	T	T	T	C
ss45702046	mCV24718803	ABI	CRAMUS_MOUSE	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571400					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786729	NES09127111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140937929 () rs orientation: forward

Symbol	Name	Function Class
Gm68349	predicted gene, 68349	292 bp upstream
Rr398649	regulatory region 398649	within coordinates
Rr603685	regulatory region 603685	within coordinates
Tssr40035	transcription start site region 40035	within coordinates