rs27571394 SNP Detail

Summary

• ID
  rs27571394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140938437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGACTGA CAGTGCCCAC
  CTCTCGCCAG ACCACTCACA TCCGATACCC ACCGTCCGTT ATGCCACCTC ACCAGCCTCC
  TTCAGAGCCT CTTTCTCTGA TACTCTGGTC TGGGCCTCCT CTCCCCCTCA GTTAGGGGAG
  TCGCTCTCCA TTCCTGGAGG GCCATCATGA TGTCAGCTCA GCCTTTGACT GAACTGGCTG
  Y
  ACTTTGAGTT TGGAGAGTGG CCTGAGGGAG TCTGGGACGC CTTGTGGGAA GCCAGTCAAG
  ACTTGAAGAC TTGTATGTTC ACGAACACAT CTTGAGCCAG AGGGGGGAGA CCAAGTGTTA
  CTCCTGAAGC TCTGAGGAGC CAGTAGGGGT TTCTAGTTTG CTTTCCTATC TGCACCTCAG
  GATGCTCAGG CAGGGCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786723	NES09127097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571394					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786723	NES09127097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140938437 () rs orientation: forward

Symbol	Name	Function Class
Gm68349	predicted gene, 68349	800 bp upstream
Rr398649	regulatory region 398649	463 bp downstream
Rr603685	regulatory region 603685	310 bp distal
Tssr40035	transcription start site region 40035	491 bp downstream