rs27571392 SNP Detail

Summary

• ID
  rs27571392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140938744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCAAGT GTTACTCCTG
  AAGCTCTGAG GAGCCAGTAG GGGTTTCTAG TTTGCTTTCC TATCTGCACC TCAGGATGCT
  CAGGCAGGGC TGTACATTTC TTGCTTTCAT CCAGCCTCAT GCAAGGCCAG GCCTGCCCAC
  CTAGACCTCC CATCTACTCT AGGCTGGTGA CATGTTCCTG CCTTGAGGAA TCCTGCTCCA
  Y
  GGCTATCTGG TGCCCTTGTC CAGAGGTGCT TGATAAATAC ATGTGGGGAT GGCAAACTGA
  GAGGAGTAAA TCAGAGGACG CCTGGGCGCT GGGGGTGGGG GGGGCTGGGG GGGCTGGTGG
  GGGAGGTGGC ATGGCCCACC TGCTTTGCCT TAGTCTTAGA AAGAGAAACA ACTTACCGAA
  GTTGGGGAGG GGGGAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786721	NES09127099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571392					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786721	NES09127099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140938744 () rs orientation: forward

Symbol	Name	Function Class
Gm68349	predicted gene, 68349	1107 bp upstream
Rr398649	regulatory region 398649	770 bp downstream
Rr603685	regulatory region 603685	617 bp distal
Tssr40035	transcription start site region 40035	798 bp downstream