rs27571391 SNP Detail

Summary

• ID
  rs27571391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140938762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCTCTG AGGAGCCAGT
  AGGGGTTTCT AGTTTGCTTT CCTATCTGCA CCTCAGGATG CTCAGGCAGG GCTGTACATT
  TCTTGCTTTC ATCCAGCCTC ATGCAAGGCC AGGCCTGCCC ACCTAGACCT CCCATCTACT
  CTAGGCTGGT GACATGTTCC TGCCTTGAGG AATCCTGCTC CATGGCTATC TGGTGCCCTT
  R
  TCCAGAGGTG CTTGATAAAT ACATGTGGGG ATGGCAAACT GAGAGGAGTA AATCAGAGGA
  CGCCTGGGCG CTGGGGGTGG GGGGGGCTGG GGGGGCTGGT GGGGGAGGTG GCATGGCCCA
  CCTGCTTTGC CTTAGTCTTA GAAAGAGAAA CAACTTACCG AAGTTGGGGA GGGGGGAGTG
  AGAATTTAGA GGTTAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786720	NES09127100	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571391					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786720	NES09127100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140938762 () rs orientation: forward

Symbol	Name	Function Class
Gm68349	predicted gene, 68349	1125 bp upstream
Rr398649	regulatory region 398649	788 bp downstream
Rr603685	regulatory region 603685	635 bp distal
Tssr40035	transcription start site region 40035	816 bp downstream