rs27571387 SNP Detail

Summary

• ID
  rs27571387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140939916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATTAAA TGTGCAGATT
  CATTTAGAGA TTTCCAAGAT TCAAACCAGA CCTTGGCGAG GCTGGGTATG AAGTCTAGAA
  GCCCAAAGAC GACTCAGATC TAAATCTTTC TGGTCTGTGA TTGACAGATC TCTGCCACTA
  CAGAAAGGGC CTCATCTCAG GAGCATGTGC AATGGGTTCC GTCCAGCCAC AGACTCCAGT
  W
  GAAATGGTTT CCTCTTGCAC AGCCTTGCTG CCTCGTAAGG CAGGGACCGA AGCACCCTCT
  CTTGCACCCT CCTCCCTTGC CCACCTCCGT CTGCCTCCGT GGGTCTGTGA CCTCCTTGCT
  GCTATTGACT TCACTAGCAC TCCTAGGTGC CGAGGGTGAA GTCTTGAAAA CCCAGAACCC
  AGTCTGGCCG GATAGATAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786716	NES09127052	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571387					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786716	NES09127052	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140939916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15211	CpG island 15211	1235 bp proximal
Cplane2	ciliogenesis and planar polarity effector 2	1333 bp upstream
Rr398649	regulatory region 398649	1942 bp downstream
Rr398650	regulatory region 398650	1213 bp upstream
Rr398651	regulatory region 398651	1917 bp upstream
Rr603685	regulatory region 603685	1789 bp distal
Rr603686	regulatory region 603686	861 bp proximal
Tssr40035	transcription start site region 40035	1970 bp downstream
Tssr40036	transcription start site region 40036	1343 bp upstream