rs27564802 SNP Detail

Summary

• ID
  rs27564802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141407455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCAACAG AAAACCTAAG
  AAACATCTAG AAACCATTTT TGGTATACAG GATGCAGAAA CTCCTATCTG GGGAAACCTA
  ATGTTTGAAG AAGGTAAGAG TGAATCAGAG TGGTGAGGAG CCAAGGACCA CACCAGGCGG
  CAGTCCTCTC AGGAGGGCTG CCCTCTAACC TCCCCCTCCC GTACTCCCAA GATGTGATGC
  Y
  TCCGCTGGTC AAAAAAAGTA AGGCACGAAA GAAAAGCAAG AACATCAAAG GCTCACCCCA
  AGTCCTGACT GCGGCTCAGT GCAAGCCCTG AGGGGATGCA GGAAACACCA AATGCTATTG
  TGTTAACTAC CGAGAGGGAA ATTACACAGT TCTGGTCAGC CACAGACTTT ATTAAATCCC
  AAGACTGGCT TTTACTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785425	NES09121482	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	T	T	T		C	T	T	T		T
ss321388955	CHEV_4_141236059	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564802					SNP	T	T	C	C	T	C	T	T	T	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785425	NES09121482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141407455 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	within coordinates
Rr603857	regulatory region 603857	799 bp distal
Rr603858	regulatory region 603858	1649 bp proximal
Tssr44357	transcription start site region 44357	593 bp upstream