rs27564801 SNP Detail

Summary

• ID
  rs27564801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141407459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGAAAA CCTAAGAAAC
  ATCTAGAAAC CATTTTTGGT ATACAGGATG CAGAAACTCC TATCTGGGGA AACCTAATGT
  TTGAAGAAGG TAAGAGTGAA TCAGAGTGGT GAGGAGCCAA GGACCACACC AGGCGGCAGT
  CCTCTCAGGA GGGCTGCCCT CTAACCTCCC CCTCCCGTAC TCCCAAGATG TGATGCTTCC
  R
  CTGGTCAAAA AAAGTAAGGC ACGAAAGAAA AGCAAGAACA TCAAAGGCTC ACCCCAAGTC
  CTGACTGCGG CTCAGTGCAA GCCCTGAGGG GATGCAGGAA ACACCAAATG CTATTGTGTT
  AACTACCGAG AGGGAAATTA CACAGTTCTG GTCAGCCACA GACTTTATTA AATCCCAAGA
  CTGGCTTTTA CTTTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785424	NES09121483	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	A
ss45577543	mCV24075749	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss147741814	ENSMUSSNP2104712	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27564801					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785424	NES09121483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141407459 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	within coordinates
Rr603857	regulatory region 603857	803 bp distal
Rr603858	regulatory region 603858	1645 bp proximal
Tssr44357	transcription start site region 44357	597 bp upstream