rs27564797 SNP Detail

Summary

• ID
  rs27564797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACACTCT TGTCCTGCTG
  TTTGCAAGGC AGTTTATTAT ATACATAGTA GGAAGAAAAG CCACCAGACG TGCGGTCTCT
  GTAGACAGAA AAGCTTTTCA ACCTATGTAA AATAGTTATC AATAACCTTA TATTTGAGAT
  AGCTTAGTAT TTATTTATAG ACATGAGCTG AAAAGTTGAG ACAAATTTTT ATGGCTTTAC
  Y
  TAGAGATAGA AAGCTGTAGA GAGGGACAAA CAGGCAGATG CTACACAAGC TAGTCATAAA
  ATCCACGACA CCAGGTCCCC TACACCATTC CTAGGCACCC TCTTGCCAAA GTACTGTTTT
  GGGCTGTCTC TCCCCTTTCC TGCCTCTGGA GATAATCAGA GGGAGCAGGC TTCGAGGCAG
  AAGGTCTCAC ACATTCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785420	NES09121377	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	C	C	C	C		T	C	C	C		C
ss321388958	CHEV_4_141236713	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564797					SNP	C	C	T	T	C	T	C	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785420	NES09121377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408109 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	526 bp downstream
Rr603857	regulatory region 603857	1453 bp distal
Rr603858	regulatory region 603858	995 bp proximal
Tssr44357	transcription start site region 44357	1247 bp upstream