rs27564796 SNP Detail

Summary

• ID
  rs27564796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTTATT ATATACATAG
  TAGGAAGAAA AGCCACCAGA CGTGCGGTCT CTGTAGACAG AAAAGCTTTT CAACCTATGT
  AAAATAGTTA TCAATAACCT TATATTTGAG ATAGCTTAGT ATTTATTTAT AGACATGAGC
  TGAAAAGTTG AGACAAATTT TTATGGCTTT ACCTAGAGAT AGAAAGCTGT AGAGAGGGAC
  R
  AACAGGCAGA TGCTACACAA GCTAGTCATA AAATCCACGA CACCAGGTCC CCTACACCAT
  TCCTAGGCAC CCTCTTGCCA AAGTACTGTT TTGGGCTGTC TCTCCCCTTT CCTGCCTCTG
  GAGATAATCA GAGGGAGCAG GCTTCGAGGC AGAAGGTCTC ACACATTCCT GACCGTCTAC
  TAAAGCTTCC TTCGCCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785419	NES09121378	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	A	A	A		G	A	A	A		G
ss45625432	mCV24075751	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss147741818	ENSMUSSNP5865897	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321388959	CHEV_4_141236741	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564796					SNP	G	G	A	G	G	G	G	A	G	A	A	A	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785419	NES09121378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408137 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	554 bp downstream
Rr603857	regulatory region 603857	1481 bp distal
Rr603858	regulatory region 603858	967 bp proximal
Tssr44357	transcription start site region 44357	1275 bp upstream