rs27564794 SNP Detail

Summary

• ID
  rs27564794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCCCC TACACCATTC
  CTAGGCACCC TCTTGCCAAA GTACTGTTTT GGGCTGTCTC TCCCCTTTCC TGCCTCTGGA
  GATAATCAGA GGGAGCAGGC TTCGAGGCAG AAGGTCTCAC ACATTCCTGA CCGTCTACTA
  AAGCTTCCTT CGCCAAGTTC CTACTCTCAT CCCGACCCGT CGACATCTGA AGCTCAGCCC
  R
  CCAGATGCAG ACATCGGCTG CTGCAGAGGG CTGAACTAGC ACATCTGGAA GCGGCCGTAT
  CTCCAGCCCT TCAGCTTGAG TGTGAGCTTT ACAAGAAAAT CCTTTGGTGC ATAAATGGAG
  ACCACTGCTG GAGGAAAGCA GTCACCACAG AACGCCCTGA CAGTGGTCTG GCCGAGGAGC
  TGCCCTTGCT GTTACAGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785417	NES09121380	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G	G	G		A	G	G	G		G
ss321388961	CHEV_4_141236984	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564794					SNP	G	G	A	A	G	A	G	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785417	NES09121380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408380 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	797 bp downstream
Rr603857	regulatory region 603857	1724 bp distal
Rr603858	regulatory region 603858	724 bp proximal
Tssr44357	transcription start site region 44357	1518 bp upstream