rs27564793 SNP Detail

Summary

• ID
  rs27564793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCCAAA GTACTGTTTT
  GGGCTGTCTC TCCCCTTTCC TGCCTCTGGA GATAATCAGA GGGAGCAGGC TTCGAGGCAG
  AAGGTCTCAC ACATTCCTGA CCGTCTACTA AAGCTTCCTT CGCCAAGTTC CTACTCTCAT
  CCCGACCCGT CGACATCTGA AGCTCAGCCC GCCAGATGCA GACATCGGCT GCTGCAGAGG
  R
  CTGAACTAGC ACATCTGGAA GCGGCCGTAT CTCCAGCCCT TCAGCTTGAG TGTGAGCTTT
  ACAAGAAAAT CCTTTGGTGC ATAAATGGAG ACCACTGCTG GAGGAAAGCA GTCACCACAG
  AACGCCCTGA CAGTGGTCTG GCCGAGGAGC TGCCCTTGCT GTTACAGTTG GGATCTGACA
  GGATCAACAC TGGGTTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785416	NES09121381	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	G		A	G	G	G		G
ss321388963	CHEV_4_141237014	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564793					SNP	G	G	A	G	A	G	G	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785416	NES09121381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408410 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	827 bp downstream
Rr603857	regulatory region 603857	1754 bp distal
Rr603858	regulatory region 603858	694 bp proximal
Tssr44357	transcription start site region 44357	1548 bp upstream