rs27564792 SNP Detail

Summary

• ID
  rs27564792
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141408758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTGATGT GATCTTACTC CTACAGTGAC
  TTAAGTGAAA GCTGACTCCA AAGTACCACT AATGTGATGT TCCTCAACGC CTTCTGTTCT
  AGAATTGTTC AGTTTAAGCC AATCAATTCC TAACGAATCC CTAACTTCAT CCAAACTTCA
  S
  ACAAAAGATT GTTTTTTTTT TTTTAAATGT ACtttttaag acagggtgtc actaatgtag
  ctggccttga cctcaaatat cacttgcctc ctagaatgaa cggtatgtca gcttgcctgg
  acttttgatt ttatttatta ttcacagatc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785415	NES09121382	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G	G	G	G		C	G	G	G		G
ss321388964	CHEV_4_141237362	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564792					SNP	G	G	C	G	C	G	G	G	G	C	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785415	NES09121382	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141408758 () rs orientation: forward

Symbol	Name	Function Class
Rr377311	regulatory region 377311	1175 bp downstream
Rr603858	regulatory region 603858	346 bp proximal
Tssr44357	transcription start site region 44357	1896 bp upstream