rs27564791 SNP Detail

Summary

• ID
  rs27564791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAATAT CACTTGCCTC
  CTAGAATGAA CGGTATGTCA GCTTGCCTGG ACTTTTGATT TTATTTATTA TTCACAGATC
  TTAAAAATCA AAAGCAACTA TTTGTTGCAA AGAAAATAAC AACCAAAAGA ACAAAGTATT
  TGGCAAGTGA GTCCAACTTA TTCAAAGTAC TCCTAAGAGC AACACCTGTA TAATCACTGA
  Y
  TTATCAAACT GCTTCTAAAA ATAGCATACA AGTACATACA TCAAAAGCTA TCGTAATGAA
  ATCTTTTCCA GACTGGTACT CTATATTTTA GCTAGGGCCA CTTCCCAAAC TTCCACATGG
  GAGAGTCGTT GGGCCACACC ACTGCCTTTG CATGCCAATT TCGTCTGCTC ACAAAGGCCT
  TCTGGGAGGA GTCTGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785414	NES09121334	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	T	T	T		C	T	T	T		C
ss45646135	mCV24075763	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss147741829	ENSMUSSNP1098723	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321388967	CHEV_4_141237633	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564791					SNP	C	T	C	C	C	C	T	C	T	T	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785414	NES09121334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409029 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1446 bp downstream
Rr603858	regulatory region 603858	75 bp proximal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1845 bp downstream