rs27564790 SNP Detail

Summary

• ID
  rs27564790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGATTTT ATTTATTATT
  CACAGATCTT AAAAATCAAA AGCAACTATT TGTTGCAAAG AAAATAACAA CCAAAAGAAC
  AAAGTATTTG GCAAGTGAGT CCAACTTATT CAAAGTACTC CTAAGAGCAA CACCTGTATA
  ATCACTGATT TATCAAACTG CTTCTAAAAA TAGCATACAA GTACATACAT CAAAAGCTAT
  Y
  GTAATGAAAT CTTTTCCAGA CTGGTACTCT ATATTTTAGC TAGGGCCACT TCCCAAACTT
  CCACATGGGA GAGTCGTTGG GCCACACCAC TGCCTTTGCA TGCCAATTTC GTCTGCTCAC
  AAAGGCCTTC TGGGAGGAGT CTGCCATCAG TACTTTCTTT TATCCACCCC ACCCTGTGGC
  TCCAAGGATT TGTGACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785413	NES09121335	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		T	C	C	C	C	C	C	C	T
ss45581828	mCV24075773	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss147741834	ENSMUSSNP6938384	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27564790					SNP	T	C	C	C	T	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785413	NES09121335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409081 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1498 bp downstream
Rr603858	regulatory region 603858	23 bp proximal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1793 bp downstream