rs27564789 SNP Detail

Summary

• ID
  rs27564789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGAAAA TAACAACCAA
  AAGAACAAAG TATTTGGCAA GTGAGTCCAA CTTATTCAAA GTACTCCTAA GAGCAACACC
  TGTATAATCA CTGATTTATC AAACTGCTTC TAAAAATAGC ATACAAGTAC ATACATCAAA
  AGCTATCGTA ATGAAATCTT TTCCAGACTG GTACTCTATA TTTTAGCTAG GGCCACTTCC
  Y
  AAACTTCCAC ATGGGAGAGT CGTTGGGCCA CACCACTGCC TTTGCATGCC AATTTCGTCT
  GCTCACAAAG GCCTTCTGGG AGGAGTCTGC CATCAGTACT TTCTTTTATC CACCCCACCC
  TGTGGCTCCA AGGATTTGTG ACTCAGAACG TCACCCCCAC CCCCAAGCCA ACACCAGGCT
  TCACTGCACT TCCTGTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785412	NES09121336	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	C	C	C		T	C	C	C		C
ss321388968	CHEV_4_141237739	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564789					SNP	C	T	T	C	T	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785412	NES09121336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409135 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1552 bp downstream
Rr603858	regulatory region 603858	within coordinates
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1739 bp downstream