rs27564787 SNP Detail

Summary

• ID
  rs27564787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTACTTT CTTTTATCCA
  CCCCACCCTG TGGCTCCAAG GATTTGTGAC TCAGAACGTC ACCCCCACCC CCAAGCCAAC
  ACCAGGCTTC ACTGCACTTC CTGTTCTTGC TTCAGACATG GCTCTAAGCT GGGTGACAGA
  ATCCTGGGAG CAATTTCCTA GCGAATCACA CAGACATCTT TGGTGTAGAA CAGGCAAAAG
  R
  TAGACAGGCC GTGCTCATCT GAAAGATTTT CTCAAAGACA GCCCGGCTAG CCTGATGCTC
  AGAGGGCCTG ATGGAGAGCT GTGAACCACA AGGCCATCCA GCCACGTTTC CCTAAATCCA
  GAAAGGATCA TGGTACTCAG TGTGACTTGC CATCGTGTCA CTGAAGTGAG TCTCGGCACA
  CAAACAAGTG GTAAAAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785410	NES09121338	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	A	A	A		G	A	A	A		G
ss45614638	mCV24075775	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss321388969	CHEV_4_141238032	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564787					SNP	G	G	A	G	G	G	G	A	G	A	A	A	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785410	NES09121338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409428 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1845 bp downstream
Rr603858	regulatory region 603858	13 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1446 bp downstream