rs27564786 SNP Detail

Summary

• ID
  rs27564786
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCTTCA GACATGGCTC
  TAAGCTGGGT GACAGAATCC TGGGAGCAAT TTCCTAGCGA ATCACACAGA CATCTTTGGT
  GTAGAACAGG CAAAAGATAG ACAGGCCGTG CTCATCTGAA AGATTTTCTC AAAGACAGCC
  CGGCTAGCCT GATGCTCAGA GGGCCTGATG GAGAGCTGTG AACCACAAGG CCATCCAGCC
  W
  CGTTTCCCTA AATCCAGAAA GGATCATGGT ACTCAGTGTG ACTTGCCATC GTGTCACTGA
  AGTGAGTCTC GGCACACAAA CAAGTGGTAA AAAAGAACAA GACCAAAGAA CAGAAACCCC
  TGTAAGTGCC CCTAAAGTTT CAAAAACTCC TGAGATATGA ACCCGTCTGT GCTCGATGAC
  TTCAATTTTG ATGAATAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785409	NES09121339	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27564786					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785409	NES09121339	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409532 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1949 bp downstream
Rr603858	regulatory region 603858	117 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1342 bp downstream