rs27564785 SNP Detail

Summary

• ID
  rs27564785
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTCTA AGCTGGGTGA
  CAGAATCCTG GGAGCAATTT CCTAGCGAAT CACACAGACA TCTTTGGTGT AGAACAGGCA
  AAAGATAGAC AGGCCGTGCT CATCTGAAAG ATTTTCTCAA AGACAGCCCG GCTAGCCTGA
  TGCTCAGAGG GCCTGATGGA GAGCTGTGAA CCACAAGGCC ATCCAGCCAC GTTTCCCTAA
  W
  TCCAGAAAGG ATCATGGTAC TCAGTGTGAC TTGCCATCGT GTCACTGAAG TGAGTCTCGG
  CACACAAACA AGTGGTAAAA AAGAACAAGA CCAAAGAACA GAAACCCCTG TAAGTGCCCC
  TAAAGTTTCA AAAACTCCTG AGATATGAAC CCGTCTGTGC TCGATGACTT CAATTTTGAT
  GAATAAAACC AAGCCTTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785408	NES09121340	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	T	A	A	A	A		T	A	A	A		A
ss321388970	CHEV_4_141238148	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564785					SNP	A	A	T	T	A	T	A	A	A	A	T	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785408	NES09121340	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409544 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr377311	regulatory region 377311	1961 bp downstream
Rr603858	regulatory region 603858	129 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1330 bp downstream