rs27564783 SNP Detail

Summary

• ID
  rs27564783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141409809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAGTG GTAAAAAAGA
  ACAAGACCAA AGAACAGAAA CCCCTGTAAG TGCCCCTAAA GTTTCAAAAA CTCCTGAGAT
  ATGAACCCGT CTGTGCTCGA TGACTTCAAT TTTGATGAAT AAAACCAAGC CTTGAAAGGG
  GGGGGGGGGA GAATGATAGT GACTTTTAGG CAAAGTCAGT TAATGCTAAG TTCAGAATTC
  R
  ATTTTAATAC TTTCATTTTA ATAAACTCTC AACCTGGAAC CTGGAATTAT CCTTAAAATC
  CTTTTCAAGA AAAGTAAGAT TACAGATTCC TGCCAGACAC CTAAGACAAC AGTTTATATT
  CCAGGAAAGG ATTCTTTCAA ACCTATCCAG AGTGATTATT GCACAGTGGG GCCCACGGAC
  AGAGACTTGC AAGGCGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785406	NES09121342	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G	G	G	G		A	G	G	G		G
ss321388973	CHEV_4_141238413	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564783					SNP	G	G	A	A	G	A	G	G	G	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785406	NES09121342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141409809 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr603858	regulatory region 603858	394 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	1065 bp downstream