rs27564781 SNP Detail

Summary

• ID
  rs27564781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141410136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATTCTT TCAAACCTAT
  CCAGAGTGAT TATTGCACAG TGGGGCCCAC GGACAGAGAC TTGCAAGGCG AGGGCTTACA
  CTAAAAAGGC CACAACAAAC ACAGCTACAC ATTCTGCCCC ACTCTAGCTC AACTTGATGA
  ACACAAACAT GGATCCTGCT TAGAAAGGAA ACTCCTGAGG AAAGAAAGGG ATGAAGACTG
  Y
  ACCAAGGCCA CTGTTGTCAG AACTTCCATT GTATTTCCAC CGCCATGAGG GGCGCTCACA
  AACAAGTACC GAGAGAGGGG CCAGGGACAA AAGGCTCTCC CAGCACTTGC TCGCTGTCTC
  ACTCAGCTCC GACTGAGCAT GAGAAGAACT TCCTAGCAGA AGTCTTCCTA ACAGAGTCTG
  CACAGCCAGC AGGCTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785403	NES09121345	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	T	C	C	C		T	C	C	C		C
ss321388976	CHEV_4_141238740	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564781					SNP	C	C	T	T	C	T	T	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785403	NES09121345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141410136 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr603858	regulatory region 603858	721 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	738 bp downstream