rs27564780 SNP Detail

Summary

• ID
  rs27564780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141410827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCGCCCT ACTTAAATGT
  CAACCCTGAG CACACAAATC AAAACATACA ACTCTAGAAG TTATTATCTT CTCCTTCTCA
  AAACATACAA CTCTAGAAGT TATTATCTTC TCCAGCTTCC TGTTAAAAGC CATCCCCTGC
  ACACAGCACA GCCAGAGCCA CGGCGGGCAG CTGATCTGTC CTAGCTCCGT AGATGGCAGG
  Y
  TCCTCATGAC TCCTGCTTTC AAAGCACTCA CTCATTCTAA AATGGTATGC TATACACAAA
  ACCATCTGCT TTATTCCAGA ATACATCATC GTCATGAGAA TAAAAAGCTT TGTATGCACA
  CACTGCCAAT ACATTTAAAA GGCCCAAATG TTAACAAGTA GAATAGACAA ATTCAGACAA
  AAGATCATAA ATTACTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785402	NES09121346	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	T	T	T		C	T	T	T		C
ss45647152	mCV24075785	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						T
ss147741843	ENSMUSSNP5579728	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321388977	CHEV_4_141239431	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27564780					SNP	C	C	T	C	C	C	C	C	T	T	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785402	NES09121346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141410827 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	mRNA-UTR
Rr603858	regulatory region 603858	1412 bp distal
Rsc1a1	regulatory solute carrier protein, family 1, member 1	47 bp downstream