rs27563425 SNP Detail

Summary

• ID
  rs27563425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137771576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTATCTC TCCCATAGCC ACACTGGCTG GGATGGCTCC
  TATCTCTCCC CCATAGCCAC ACTGGCTGGG ATGGCTCCTA TCTCTCCCCC ATAGCCACAC
  W
  GGCTGGGATG GCTCCTATCT CTCCCCCATA GCCACACTGG CTGGGATGGC TCCTATCTCT
  CCCATAGCCA CACAGGCTGG GATGGCTCCT ATCTCTCCCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769857	NES09142997	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563425					SNP	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769857	NES09142997	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137771576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			1705 bp proximal
Rr602828	regulatory region 602828			1797 bp proximal
Tssr39818	transcription start site region 39818			1082 bp upstream
Tssr39819	transcription start site region 39819			1540 bp upstream