rs27563419 SNP Detail

Summary

• ID
  rs27563419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137772650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCATGT CCAGTGGGAA
  CGATGTGGAG AAATGGAGCT AATCTCATCA GGAGGTTTGA AATGGTTGCT TTTCCAGTTT
  CTTGGGAGGA GTAAGTGTCC AGGGCCAAAG GTTGGGTACA AAGTGTGGGT CCCTGGCTGG
  ACACTCTGCC ACTGCTGAGC CGTTCTGCTT GAGTTCTCTT TTCCTTAACT CGCTCGCCTT
  Y
  CAGGATTCCA CGAGGACCGG TGCAGCAGCC TTTGGAGGAT CGGCTCTTCC CACCTACGGT
  CTCTGCAGTC TATAGCACGG TGAGCATCCC GGTGGCTGGC AGGCTGGCTG TGAATGCAGT
  GCCTGGGGTG GAAAAGTCAA CAAAATCCCA GTGAGATCAG GTGCATGTTA CGTGACCAGG
  TAACCTTCAC TCACATTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769851	NES09142980	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563419					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769851	NES09142980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137772650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr602827	regulatory region 602827			631 bp proximal
Rr602828	regulatory region 602828			723 bp proximal
Tssr39818	transcription start site region 39818			8 bp upstream
Tssr39819	transcription start site region 39819			466 bp upstream