rs27563409 SNP Detail

Summary

• ID
  rs27563409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137774280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGCATT TTAGGGTCTA
  GAAAGCCTGG AATGGCTGTG CACTCTGTAA TGCCAGCACG TGGAGGCCAA GGCTGGAAGA
  CTCTAGTCTC AGGCTAGCTT GAGGTACTTG GTGGACCCTT GCCCAGCGTG TGCACTGTTC
  TGGATTCAGG CGCCACACTG CCAGGAAAAG CAAGAGCAGT GGAGGCTAAA GACCTTGCAG
  Y
  ACAGAGCCCC TGAGATGGCC ATGGGTGGCA GAGGCTTCAA CGTGCACATG CTTGCATGGA
  GAGATGTTGG ACTTCCGTCA TGAGATTACA CAGGGAATTA TGGGGTATAG GACATGAGAT
  TACATTGGGG AGTTATGGGG TATAGGACAT GAGGTTACAT GGGGGAATTA CGGGTTGTGG
  GACATGAGAT TACATGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769841	NES09142920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563409					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769841	NES09142920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137774280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602827	regulatory region 602827			978 bp distal
Rr602828	regulatory region 602828			886 bp distal
Tssr39818	transcription start site region 39818			1615 bp downstream
Tssr39819	transcription start site region 39819			1159 bp downstream