rs27563010 SNP Detail

Summary

• ID
  rs27563010
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134164958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TTTGGTTCAC ATGGAAGGGC
  K
  GCTGTGTTGC GTTTTCCTTA GAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37761741	NES09157651	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	G		T	G		G
ss147530278	ENSMUSSNP6538498	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				T
ss321347824	CHEV_4_133993562	CHEVERUD	SCREENING_POP	f	SNP										G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27563010					SNP	T	T	G	T	T	G	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761741	NES09157651	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134164958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15040	CpG island 15040	477 bp distal
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	644 bp distal
Rr601676	regulatory region 601676	1546 bp proximal