rs27563009 SNP Detail

Summary

• ID
  rs27563009
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134164968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC ATGGAAGGGC GGCTGTGTTG
  M
  GTTTTCCTTA GAGCACAGGG GCTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761740	NES09157652	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A	A	C		C	A	A		A
ss147530288	ENSMUSSNP702998	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				A
ss321347826	CHEV_4_133993572	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563009					SNP	A	A	A	A	A	C	A	A	C	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761740	NES09157652	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134164968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15040	CpG island 15040	487 bp distal
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	654 bp distal
Rr601676	regulatory region 601676	1536 bp proximal