rs27563007 SNP Detail

Summary

• ID
  rs27563007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134165079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TGGGTTCCTT TTGGGATCCC
  Y
  GTATGCACAA AATTCAAGGA ATAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761738	NES09157654	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C		C	T	T	T		T
ss147530301	ENSMUSSNP4551338	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321347829	CHEV_4_133993683	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563007					SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761738	NES09157654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134165079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15040	CpG island 15040	598 bp distal
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	765 bp distal
Rr601676	regulatory region 601676	1425 bp proximal