rs27562900 SNP Detail

Summary

• ID
  rs27562900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138814451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA CTCCAGGGCC CTCCCTGTGC
  K
  GGGCTAGCCT CTCTAGGCAT CAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37765929	NES09139905	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	G	T	T	T		G	G	T	T		T
ss147665065	ENSMUSSNP613682	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					T
ss321379319	CHEV_4_138643055	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27562900					SNP	G	G	T	T	T	G	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765929	NES09139905	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138814451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbl1	NBL1, DAN family BMP antagonist			Intron
				Noncoding-Transcript-Variant
Rr398632	regulatory region 398632			755 bp downstream
Rr603100	regulatory region 603100			587 bp distal
Rr603101	regulatory region 603101			882 bp distal
Rr603102	regulatory region 603102			within coordinates
Rr603103	regulatory region 603103			1918 bp proximal
Tssr44200	transcription start site region 44200			1540 bp upstream