rs27562696 SNP Detail

Summary

• ID
  rs27562696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138881048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA CTAGAGTCTG AGAACGAAGC
  R
  AACTGGTTGG AAAAGGGCTT GGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37765725	NES09137541	PERLEGEN	MM_PANEL2	f	SNP			A	A	G			G		A
ss147666629	ENSMUSSNP3187564	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				A
ss321379835	CHEV_4_138709652	CHEVERUD	SCREENING_POP	f	SNP							A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27562696					SNP	G	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765725	NES09137541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138881048 () rs orientation: forward

Symbol	Name	Function Class
Gm33304	predicted gene, 33304	within coordinates
Rr603122	regulatory region 603122	848 bp proximal
Rr603123	regulatory region 603123	1094 bp proximal