rs27562693 SNP Detail

Summary

• ID
  rs27562693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138882453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTTATT TTTAAACCTG
  GATTTGAGGA ATTTGATTTG GAAAAGTGAC AGGATGACAA AATAGAAAGT CACAAGAGGT
  TAGTGGTTCT GGGCATCCTC CTGAGAGATG TGATGTTCCC GAGGGCTTCC TGGAACCCAG
  GGAGCGTAGG CCATCAGAGG ACAAGGGAAC CCGCGTTCTG GGTCAGCTCT ACAAAGCATG
  Y
  TCCTCGCGAT CTGCATTCCG AAGCATCCAC TCTAGCGCTT GGGTTTGCTG CAGGATCCAG
  CTGTGCGATG GGAGATCCAG CCAGACTTGG TCCTGGGTCA TGCGGGGCTC ATGGGTTAGA
  CGTAAAACTT GACAGTTGCG ACCTAGTTTC TATAAAAGTT CCATAACAAA GATGCAAAGA
  TTTGAGGTGG GACTCCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37765722	NES09137518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27562693					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765722	NES09137518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138882453 () rs orientation: forward

Symbol	Name	Function Class
Gm33304	predicted gene, 33304	within coordinates
Rr603122	regulatory region 603122	312 bp distal
Rr603123	regulatory region 603123	within coordinates