rs27561654 SNP Detail

Summary

• ID
  rs27561654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137307424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCACCAC AGGAAGGACC
  AACAGAAACA GTCAAGCTGG CCAGATGTAG CAGCCAGAAG AACAAATGTC TCCCGTCAAA
  TTGGATCTTG TGGTCAAGAT AAAAAACAAA TGTTACTTTC CCAAGTATTT TGTAGGCTGA
  GATTGCAACA GAAAAACTCA TGGATATCTA AGTTTCCCAT CTGAGTTTGC TCAGAACTTA
  Y
  TGAATTACTG AAGTGTCAGA CACCCTCTCC CCTGCCCTCG GGTATCTCGT GTGAGGATGG
  GGTGGATACA ATTGGGAGCC TGCCCATCCT TCTCCCATTC TCTATGTCTC CTTGCTAAAG
  GAGATCCTAA TTGCATCCCT GTGTTCTGGG GATTAGTATG TGACCCAGTT CTGACCTATA
  AGATTTAAAA AGAGGTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771877	NES09136902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27561654					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771877	NES09136902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137307424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15131	CpG island 15131	1384 bp distal
Gm70277	predicted gene, 70277	within coordinates
Gm70281	predicted gene, 70281	771 bp downstream
Ldlrad2	low density lipoprotein receptor class A domain containing 2	Intron
Rr602650	regulatory region 602650	1690 bp distal
Rr602651	regulatory region 602651	1830 bp distal
Rr602652	regulatory region 602652	within coordinates
Rr602653	regulatory region 602653	1853 bp proximal
Rr602654	regulatory region 602654	1981 bp proximal