rs27561653 SNP Detail

Summary

• ID
  rs27561653
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137307472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TCCCCTGCCC TCGGGTATCT
  M
  GTGTGAGGAT GGGGTGGATA CAATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771876	NES09136904	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	C	A	A	A		C	C	A	A		A
ss147612402	ENSMUSSNP3197951	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss321365359	CHEV_4_137136076	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27561653					SNP	C	C	A	A	A	C	A	C	A	A	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771876	NES09136904	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137307472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15131	CpG island 15131	1432 bp distal
Gm70277	predicted gene, 70277	within coordinates
Gm70281	predicted gene, 70281	819 bp downstream
Ldlrad2	low density lipoprotein receptor class A domain containing 2	Intron
Rr602650	regulatory region 602650	1738 bp distal
Rr602651	regulatory region 602651	1878 bp distal
Rr602652	regulatory region 602652	5 bp distal
Rr602653	regulatory region 602653	1805 bp proximal
Rr602654	regulatory region 602654	1933 bp proximal