rs27561644 SNP Detail

Summary

• ID
  rs27561644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137309358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTCTCT TTCCAGGCCC
  TTCCTACTCA CCTGTCCCCA AGGCAGACAC AGTCAAGGCG GTTGTCCCCA ACAGGAGCAG
  CCTTTGGGGC AGCTGCCAAA GAAAAGCCAT CCTGGATCTG TGCCCAGCAG GGGGCAGACC
  TGCGCAATCT CCTGTAGGCC TTTGGGGAGC CTGGGGTGCA GGCCCTGGCT GCTCTAGGAA
  R
  TGAGCAGGGC ACAAGGGGAC AGGGAGGCTC CTCAGGTCTC CTCACTGTGT TCTGGGCTCT
  CCCTCCCAGG TCTTCCTCCT TTGGATTAGA ATTGCGTCTA AGGGTTGCCA TGGAGATCTG
  GGGCCCCAAG CTGGAGAAGT CAAGGATGTC TGCTCACCCT TTGCCAGACA GGAACCAGGA
  GACTCAGATT CTGCTTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771867	NES09136830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27561644					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771867	NES09136830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137309358 () rs orientation: forward

Symbol	Name	Function Class
Gm70277	predicted gene, 70277	within coordinates
Ldlrad2	low density lipoprotein receptor class A domain containing 2	mRNA-UTR
Rr602652	regulatory region 602652	1891 bp distal
Rr602653	regulatory region 602653	41 bp distal
Rr602654	regulatory region 602654	47 bp proximal