rs27561642 SNP Detail

Summary

• ID
  rs27561642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137309617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA CTGCTGCCTT CTTAGATAGG
  Y
  GGAGGGACTG AGCTTGAGAG AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771865	NES09136833	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	T	C	C	C		T	C	C		C
ss147612438	ENSMUSSNP3063726	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321365383	CHEV_4_137138221	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27561642					SNP	T	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771865	NES09136833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137309617 () rs orientation: forward

Symbol	Name	Function Class
Gm70277	predicted gene, 70277	within coordinates
Ldlrad2	low density lipoprotein receptor class A domain containing 2	202 bp upstream
Rr602653	regulatory region 602653	300 bp distal
Rr602654	regulatory region 602654	83 bp distal