rs27561570 SNP Detail

Summary

• ID
  rs27561570
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137337052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGCTACC AGTGGCTCAC TAAATGCACA AAATAGACTG
  TGGTGTGGTC ATCCAGGTGC TGTAGAGAAG AATAATGCAG GGCAGGGCAG GGCTGGCTGC
  W
  GGCCTCTGTG CTTCACAGGA AAGCAGGAGA AGGGTGTTTC TGAGCATCCG AGTCACAGAA
  GGCCAGGCGG AGGTGGGACC TGTGGTTTGA GGACAGGAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37771792	NES09135866	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27561570					SNP	A	T	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771792	NES09135866	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137337052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			within coordinates
Tssr39763	transcription start site region 39763			930 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant