rs27561566 SNP Detail

Summary

• ID
  rs27561566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137337290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT TGTCCATCAA GTGAGACTTG
  R
  GCCATCATAG TTGTGGTCAC GGGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37771788	NES09135870	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G			G	G	A
ss147613307	ENSMUSSNP3201261	ENSEMBL	ENSEMBL_Sanger	f	SNP						A
ss321365632	CHEV_4_137165894	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27561566					SNP	G	A	A	G	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771788	NES09135870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137337290 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			within coordinates
Tssr39763	transcription start site region 39763			692 bp upstream
Tssr39764	transcription start site region 39764			1971 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant