rs27561447 SNP Detail

Summary

• ID
  rs27561447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137562332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GCATGCGCCT GCGCGGAGAC
  K
  GTCTCATGGT TTTTCTCCTG TAGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770966	NES09149552	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	G	G	G		T	T	G	G		G
ss46431849	mCV25244886	ABI	CRAMUS_MOUSE	r	SNP		A				C
ss147621718	ENSMUSSNP2211649	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				G
ss321368042	CHEV_4_137390936	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27561447					SNP	T	T	G	G	T	G	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770966	NES09149552	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137562332 () rs orientation: forward

Symbol	Name	Function Class
Rr602734	regulatory region 602734	525 bp proximal
Rr602735	regulatory region 602735	1125 bp proximal