rs27561429 SNP Detail

Summary

• ID
  rs27561429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137563276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGAAGC TCCCAGTTCT
  CCTTTCCACA CCCCATTTCC TCTTCTGCCC CGCCCCCTCC TCTGTGCCCC TGTGACTCCC
  TGATGTCAAC TCTAACCCCC CAGTTCAGGT AGCCCTGCCA GCCTGTTTCA TTCCCTAGCC
  CCTCCCACAC AGATCAGCCT AGACTCTGTC CGCTCCTTTC TCCTCCCTAG CGGTTACATT
  Y
  TTAAATCGAG CTGTTTCTTC GTCCACTTCC GCTACAGAGC CCCTGAACTC AAGTGTGGTA
  CTTATTTCCC TTCTGGCTCA TGAGCCACAC AGATCAGCCT AGTGGCAGCT TCAGTCTTGT
  CCCCTGCATT GCTCTCTGGG TACCACAGCG CAAGGCTGCT CCGGTGTTCC TGTGTAGGTA
  TCTGCTGCCC CTGCTGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37770948	NES09149527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27561429					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770948	NES09149527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137563276 () rs orientation: forward

Symbol	Name	Function Class
Rr602734	regulatory region 602734	within coordinates
Rr602735	regulatory region 602735	181 bp proximal
Rr602736	regulatory region 602736	1875 bp proximal