rs27559366 SNP Detail

Summary

• ID
  rs27559366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGTGTT GGAGTTCCCC
  GACTTTTCGA AAGAAATTCA TAAGTACTTA GGAGCAAAAT GATAGGATCT TCGAGGTACG
  CTTTAAAGTT TTCTAGTCGA ATTGAAGGCA TTTCGGTTCA GTCAGCCTCC AGAAAATGCA
  GGAAGCACCA TCGACTTACT GTCTTCTCCT TGCAGAGCTG CAACACGGAT GGATGAATGA
  R
  TTAGCTACCT GTGGCAACCA AAGAGCCTTA AAAGCTAGCC TTAAAACCAG ATGTGCAAGC
  CCTCTCTCAA GGATAGCCCT GGCACTCTTG AGGCAGGAGG ATTAGGAGTT CAAGGCCATC
  CTAGGCTACT TTGATGACTT TGGGGCCAGT CTGGGCTACC TGAAACGATA TTACAAACAA
  ACAACAAACA GAGTTATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758008	NES09168938	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A		A	A	A		A
ss147477914	ENSMUSSNP1902962	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss321336227	CHEV_4_132313422	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559366					SNP	G	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758008	NES09168938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	176 bp distal
Gm70165	predicted gene, 70165	695 bp upstream
Rr601063	regulatory region 601063	266 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	260 bp upstream
Tssr43702	transcription start site region 43702	400 bp upstream
Tssr43703	transcription start site region 43703	355 bp upstream
Tssr43704	transcription start site region 43704	320 bp upstream
Tssr43705	transcription start site region 43705	267 bp upstream
Tssr43706	transcription start site region 43706	248 bp upstream