rs27559365 SNP Detail

Summary

• ID
  rs27559365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGATAGC CCTGGCACTC
  TTGAGGCAGG AGGATTAGGA GTTCAAGGCC ATCCTAGGCT ACTTTGATGA CTTTGGGGCC
  AGTCTGGGCT ACCTGAAACG ATATTACAAA CAAACAACAA ACAGAGTTAT TTGCTGATCG
  TGCCAGGAGA TGAGGACTAC TAGAAACTGG GCAAAAGGGA GATAAGATGG TGTTGTCCCC
  Y
  TGAACATGCC TTGAGAGCCT GAGGGCTGAA TCACTCCTTA GCAAGTTACC TAACCTGAGA
  AGACAGAGAG AGCTGTGACT CAAGTCTGAG GAAGGCGATG AGAGGTTTCT GGAAGGAGAT
  GACATAAACT TACTCCCTTT GTTTTGATTT TTTTTTTCCC TTGCAGTTAG GGATGGTTTG
  GGCTTTGTCT TTTTGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758007	NES09168893	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	T		T	C	C	C		T
ss147477934	ENSMUSSNP2150042	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321336233	CHEV_4_132313690	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559365					SNP	T	T	C	C	C	C	C	T	C	C	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758007	NES09168893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485086 () rs orientation: forward

Symbol	Name	Function Class
Gm70165	predicted gene, 70165	427 bp upstream
Rr601063	regulatory region 601063	534 bp distal
Rr601064	regulatory region 601064	260 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	528 bp upstream
Tssr43702	transcription start site region 43702	668 bp upstream
Tssr43703	transcription start site region 43703	623 bp upstream
Tssr43704	transcription start site region 43704	588 bp upstream
Tssr43705	transcription start site region 43705	535 bp upstream
Tssr43706	transcription start site region 43706	516 bp upstream