rs27559363 SNP Detail

Summary

• ID
  rs27559363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGTTT TTTTGCTCCT
  GTTGTTGTCC GTACAGGGAT GAAACCCAGA TCTTCACTCA AGCAAGGCAA ACTGTCTAGC
  TCACCGCCAC ACTCCCACGC CTAACCAGCT TGAACTTGAT GAACACAGGA GAAAACAGGT
  TGTGTGGGAG GTGGGAGAGG AGCGTTAGTG AGGCAGGAGG AAGAGTGGAG GGGGAAGAGT
  K
  TTGCAAAGAG TGATGGGGGC TTCTGAGGCT CTGAAGCAGG CAGGAGCCAG GCTGTGCTTA
  GATGTTTGAG CTGGGAGCTT TGGGAAGCCA AGAAGAGGAT CAGAGGCAAA GTTGAGGCTG
  GAGAGATGGC TCAGCAGTTA AGAACACTGG CTGCTCTTGC AGAGGACTCA GGTTTGGTTT
  CCATCAACTA CATAGAGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37758005	NES09168896	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		T	T	G		T	T	T
ss45625312	mCV24227049	ABI	CRAMUS_MOUSE	f	SNP	G	T					T	T
ss147477949	ENSMUSSNP428209	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T						T
ss321336238	CHEV_4_132314109	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27559363					SNP	G	T	T	T	T	T	T	T	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758005	NES09168896	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	863 bp distal
Gm70165	predicted gene, 70165	8 bp upstream
Rr601063	regulatory region 601063	953 bp distal
Rr601064	regulatory region 601064	679 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	947 bp upstream
Tssr43702	transcription start site region 43702	1087 bp upstream
Tssr43703	transcription start site region 43703	1042 bp upstream
Tssr43704	transcription start site region 43704	1007 bp upstream
Tssr43705	transcription start site region 43705	954 bp upstream
Tssr43706	transcription start site region 43706	935 bp upstream