rs27559362 SNP Detail

Summary

• ID
  rs27559362
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT TTGCAAAGAG TGATGGGGGC
  K
  TCTGAGGCTC TGAAGCAGGC AGGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758004	NES09168898	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T		T	T	T	T		G
ss321336239	CHEV_4_132314130	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559362					SNP	G	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758004	NES09168898	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	884 bp distal
Gm70165	predicted gene, 70165	within coordinates
Rr601063	regulatory region 601063	974 bp distal
Rr601064	regulatory region 601064	700 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	968 bp upstream
Tssr43702	transcription start site region 43702	1108 bp upstream
Tssr43703	transcription start site region 43703	1063 bp upstream
Tssr43704	transcription start site region 43704	1028 bp upstream
Tssr43705	transcription start site region 43705	975 bp upstream
Tssr43706	transcription start site region 43706	956 bp upstream