rs27559125 SNP Detail

Summary

• ID
  rs27559125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132567940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTTTAT TTACAGGACT
  AGGAGGCAGA GGCAATCAAT CTTTGTTGAG TTCAAGGCCA GGCTGCTCTA TATAGGGAGC
  TCCAGGATAC CCAGGGCCGA CCCTGTCTTA AAAAGCAGAA ACCCAGAAGG GAAGTAACAT
  TGCTGAAGAC AAAGTAAAGG AGAGGGTGGG AAGTGAGTCC CGGTGGAAAA CCTTTAGAAC
  R
  GTGTGCTTCA TTACCTCAAT TAGCTTGTCT CCTTTCACCA CATCCAGATG TAAGCCAGGT
  GGTGGTTTAC CTGCCCTGAA AAAGAAGAGC GAAACAGCAG TTTTAAGGAT GAGTCCATGA
  CTGTTTCAAT CCCTGTCCCG TCAACACTGA GGCTCTCCTA CAGTTAGAGT TAGTTCATAT
  TCAAACAGAA ACGTCATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757760	NES09166453	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		A	G	G	G		G
ss321336767	CHEV_4_132396544	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559125					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757760	NES09166453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132567940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			1750 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr601096	regulatory region 601096			1458 bp proximal