rs27559122 SNP Detail

Summary

• ID
  rs27559122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132569226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCACCC TGAACAGGTG
  TTTGTGAAAA AAAATCTAAG TCATCAGACT GTTTTCTATA CCTCGCTTCA TCATTCAAGG
  GGATGGATGC TCAAATGTCA AATCACCTGA CACAGTTCCT GGTATACACC AGACCCTGAG
  GTAATGACAG GTGATCTCAA AGAAAGAGTC TCTTTATATT TGGCTGGCCC AAATTTGAAA
  Y
  AAGTGCAGCC AGGGACCAGT GTGGATAAAG AATTTGTAGG CTGAAGCACA TGGATATGTT
  AAAAGAATAA AGAAATCCAG GAAACAGCCA AGCATTCATT CGCTTCCTGG GCTTGTTCTT
  TTGAACCTTC CAGGGCCCTT ACATTTGCAC AGAAGAAACG ATATCGAGTC TATCTCATTG
  AAGATTCAAC ACAGACATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757757	NES09166390	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	T		T
ss321336774	CHEV_4_132397830	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559122					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757757	NES09166390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132569226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			464 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr367719	regulatory region 367719			1248 bp upstream
Rr367720	regulatory region 367720			1361 bp upstream
Rr601096	regulatory region 601096			172 bp proximal
Rr601097	regulatory region 601097			1188 bp proximal
Rr601098	regulatory region 601098			1198 bp proximal
Rr601099	regulatory region 601099			1525 bp proximal
Tssr43718	transcription start site region 43718			1028 bp downstream
Tssr43719	transcription start site region 43719			1196 bp downstream