rs27559118 SNP Detail

Summary

• ID
  rs27559118
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132570765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCGGA GGGCATCAGG
  GGCTGGGTTT GAAGTCTGCA GTGTTTGCTG GAGAGGCTGG GGGCGGGTGT CTCCTTGGTC
  ACGGGGTCAG GAGTGGTTTG TACCTTGATG CGGCTTTCGC GCTGCGTTTT CCGCCAGAAA
  CCCTAGAGCT CTGCAATCTG CATTAACTCC CAGCTACCCA CCCCCTCGGG CTTCATCTAG
  S
  GATAAGCAGG TGATGGCTAG AGATAAGAAG TGATGGCTTT TTTTTTCCCC CTTTTTCCAG
  CCTTCCTTCG AAACACTGCA TCTGAAAACA GAATCCTTAC TCATTTGTCC TTTCTGATCC
  CAAGTCTGAT GTGTACGGCT CAGTGGTAGT GTGTTCAGCA GGCGCGAATG AGGCCACTGA
  TTCAATTCCC CAAAACCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757753	NES09166394	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G		G	C	C	C		C
ss321336780	CHEV_4_132399369	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559118					SNP	C	C	C	C	C	C	G	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757753	NES09166394	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132570765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	within coordinates
Ppp1r8	protein phosphatase 1, regulatory subunit 8	285 bp upstream
Rr367719	regulatory region 367719	182 bp downstream
Rr367720	regulatory region 367720	within coordinates
Rr601096	regulatory region 601096	342 bp distal
Rr601097	regulatory region 601097	330 bp distal
Rr601098	regulatory region 601098	within coordinates
Rr601099	regulatory region 601099	within coordinates
Tssr43718	transcription start site region 43718	509 bp upstream
Tssr43719	transcription start site region 43719	270 bp upstream