rs27559117 SNP Detail

Summary

• ID
  rs27559117
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132570930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCGAAAC ACTGCATCTG AAAACAGAAT CCTTACTCAT
  TTGTCCTTTC TGATCCCAAG TCTGATGTGT ACGGCTCAGT GGTAGTGTGT TCAGCAGGCG
  S
  GAATGAGGCC ACTGATTCAA TTCCCCAAAA CCAGTAATTT TCTTAGATCT GGGAGAATCT
  ATAGATTAGG CGACTGTGTC AGAAATCATG TAGTCTGTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37757752	NES09166395	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	C	G	C	C	C	G	G	G	C
ss45651994	mCV24226698	ABI	CRAMUS_MOUSE	f	SNP		C	G						G
ss147478220	ENSMUSSNP5172188	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27559117					SNP	C	C	G	G	G	G	G	C	G	C	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757752	NES09166395	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132570930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	154 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	450 bp upstream
Rr367719	regulatory region 367719	347 bp downstream
Rr367720	regulatory region 367720	160 bp downstream
Rr601096	regulatory region 601096	507 bp distal
Rr601097	regulatory region 601097	495 bp distal
Rr601098	regulatory region 601098	within coordinates
Rr601099	regulatory region 601099	158 bp distal
Tssr43718	transcription start site region 43718	674 bp upstream
Tssr43719	transcription start site region 43719	435 bp upstream