rs27559114 SNP Detail

Summary

• ID
  rs27559114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAAGCA TTAGGGTTAC
  CATCTTCCTC TAAGCCATTA GCTTGCTGGT TGTAATGGTT TTGTCTATTG AGTGCTTATG
  GGGAAGTATG TATTTCATAT GGATCAGTTC ACTTGGTATT CCCAAAACTC AAGACAGATT
  GATTCCAGAA GAGAGGCTCT AGCCTCACCT TACAAGGAGT GGTATTCGAA CCTGAGTCTA
  Y
  GTAAAGCCAA AAGCCAGGCT CTACTAGTCC CATATGTTTC TGACAACATA CCATTCCTTC
  GTATGCAGTG GATGGTCCTT TTTTCACTTT TGCAGAAAGA TGGGATGATG ACTTCACAGT
  TTTTAAAAGA AACAAATGGT TGGAGGGTGT GGCAGCACAT ATCTGAAATT CCATCTGCCT
  TTGCTTCCTG AGATACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37757749	NES09166398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	T		T
ss321336784	CHEV_4_132399971	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27559114					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37757749	NES09166398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	591 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	887 bp upstream
Rr367719	regulatory region 367719	784 bp downstream
Rr367720	regulatory region 367720	597 bp downstream
Rr601096	regulatory region 601096	944 bp distal
Rr601097	regulatory region 601097	932 bp distal
Rr601098	regulatory region 601098	397 bp distal
Rr601099	regulatory region 601099	595 bp distal
Tssr43718	transcription start site region 43718	1111 bp upstream
Tssr43719	transcription start site region 43719	872 bp upstream